GGE analyses for multi-environment studies

Published at May 31, 2023 · 12 min read

In a recent post we have seen that we can use Principal Component Analyses (PCA) to elucidate the ‘genotype by environment’ relationship (see this post). Whenever the starting point for PCA is the doubly-centered (centered by rows and columns) matrix of yields across environments, we talk about AMMI analysis, which is often used to get insight into the stability of genotype yields across environments. By changing the starting matrix, we can obtain a different perspective and put focus on the definition of macroenvironments and on the selection of winning genotypes....